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alignK()
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Align clusters |
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analyseQ()
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Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around
several smaller functions. |
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as.qlist()
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Convert a qlist or qlist-like list to a valid qlist. |
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clumppExport()
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Generate CLUMPP output from a qlist |
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collectClumppOutput()
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Collect CLUMPP output files from multiple folders |
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collectRunsTess()
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Collect TESS run results from multiple folders |
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distructColours()
|
Vector of 90 Distruct colours |
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distructExport()
|
Generate files for DISTRUCT. |
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evannoMethodStructure()
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Perform the Evanno method for STRUCTURE runs. |
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is.qlist()
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Verify if a qlist is formatted correctly. |
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joinQ()
|
Combine two or more qlist objects into one |
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mergeQ()
|
Merge replicate runs of the same K |
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plotQ()
|
Generate barplots from qlists. |
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plotQMultiline()
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Plot a qlist as individual-level multiline barplot |
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readQ()
|
Convert run files (q-matrices) to qlist. |
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readQBaps()
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Convert BAPS cluster files to qlist. |
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readQBasic()
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Convert delimited text files to qlist. |
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readQClumpp()
|
Convert CLUMPP format numeric text files to qlist. |
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readQStructure()
|
Convert STRUCTURE run files to qlist. |
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readQTess()
|
Convert TESS cluster files to qlist. |
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readQTess3()
|
Convert TESS3 R object to pophelper qlist. |
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sortQ()
|
Sort runs in a qlist based on an attribute |
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splitQ()
|
Split a qlist into sublists by attribute |
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summariseQ()
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Summarise a tabulated dataframe |
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tabulateQ()
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Tabulate runs from a qlist |
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verifyGrplab()
|
Verify a grplab dataframe |