Scatterplot annotation
Annotating scatterplots in R. Drawing polygons around point clusters using base functions and R packages ggplot, ggalt and ggforce.
Blog
- R 14
- Data Visualisation 10
- Road Trip 9
- Sweden 8
- Forest 7
- National Park 6
- Wildlife 5
- Scientific Graphs 5
- Nature 4
- NGS 4
- ggplot2 4
- Hiking 3
- Heatmap 3
- Data Analysis 3
- Calendar 3
- Web Hosting 2
- Population Genetics 2
- Image Analysis 2
- Autumn 2
- Uppsala 2
- Genomics 2
- Blogging 1
- Personal Website 1
- Camping 1
- Adobe Illustrator 1
- Adobe Photoshop 1
- Portrait Design 1
- markdown 1
- Cat 1
- Lapland 1
- UK 1
- Cloud Computing 1
- Bee 1
- Bash 1
- Scotland 1
- RNA-Seq 1
- Statistics 1
- ImageJ 1
- Iceland 1
- Texas 1
- USA 1
- Instagram 1
- Web Scraping 1
- Design 1
- Norway 1
- Winter 1
- Gardening 1
- Plants 1
- Shiny App 1
- Drone 1
- Genetics 1
- Linkage Disequilibirium 1
- SNP 1
- Portugal 1
- Greece 1
R
A guide to elegant tiled heatmaps in R [2019]
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Beautiful circos plots in R
Circos plots are popular for displaying huge amounts of data in a relatively small visual space. This is especially relevant for genomic data. This post expl...
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Calendar plot shiny app and dynamic UI
Create an interactive calendar plot in R using Shiny.
Calendar plot with ggplot2
Creating an availability calendar plot using ggplot2 in R.
Customising ggplot2
Customising a ggplot2 plot using the theme function. In this post, we are going to explore how to adjust various ggplot plot elements. What can be adjusted, ...
Photo calender using R
Create an elegant photo calendar completely using R.
Scraping Instagram and choosing hashtags
Scraping Instagram for basic public data using R to help us pick “optimal” hastags.
Multiple Statistical Testing
In the advent of big data such as genomics, running numerous statistical tests is unavoidable. But long comes strange statistical problems. This post investi...
Humanity has never lived in better times
It is easy to be disillusioned and pessimistic about the world we live in. Bad news seems to be followed by worse news. But humanity has come a long way from...
Structure ‘Sort by Q’ explained
STRUCTURE is a popular software used by biologists to infer the population structure of organisms using genetic markers. Barplots in STRUCTURE have an option...
A guide to elegant tiled heatmaps in R
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Elegant scientific graphs: Learning from examples
Scientific graphics are key to understanding complex data. In addition to graphing data, it is important that the graphics are clean, elegant and visually st...
Data Visualisation
Scatterplot annotation
Annotating scatterplots in R. Drawing polygons around point clusters using base functions and R packages ggplot, ggalt and ggforce.
A guide to elegant tiled heatmaps in R [2019]
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Beautiful circos plots in R
Circos plots are popular for displaying huge amounts of data in a relatively small visual space. This is especially relevant for genomic data. This post expl...
Calendar plot shiny app and dynamic UI
Create an interactive calendar plot in R using Shiny.
Calendar plot with ggplot2
Creating an availability calendar plot using ggplot2 in R.
Customising ggplot2
Customising a ggplot2 plot using the theme function. In this post, we are going to explore how to adjust various ggplot plot elements. What can be adjusted, ...
Photo calender using R
Create an elegant photo calendar completely using R.
Humanity has never lived in better times
It is easy to be disillusioned and pessimistic about the world we live in. Bad news seems to be followed by worse news. But humanity has come a long way from...
A guide to elegant tiled heatmaps in R
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Elegant scientific graphs: Learning from examples
Scientific graphics are key to understanding complex data. In addition to graphing data, it is important that the graphics are clean, elegant and visually st...
Road Trip
Exploring the Swedish west coast
A road trip exploring the west coast of Sweden.
Road trip through Portugal
A conference and road trip through Portugal.
Snowy Landscapes
A short winter getaway and snow landscape photography.
Exploring cosmic landscapes in Iceland
My first trip to Iceland, pictures, route and some insights.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Wild road trip through Scotland
A week-long trip to Scotland
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
Sweden
Exploring the Swedish west coast
A road trip exploring the west coast of Sweden.
Using google maps for aerial photography
Using google maps 3D for drone photography composition. Google maps 3D can be a useful tool to help you find the right composition in advance when planning a...
Snowy Landscapes
A short winter getaway and snow landscape photography.
Golden colours of the Autumn
Autumn/Fall pictures from Uppsala.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
Forest
Snowy Landscapes
A short winter getaway and snow landscape photography.
Tropical break in India
A short vacation to Kerala, India to rejuvenate myself.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Wild road trip through Scotland
A week-long trip to Scotland
Björn the Norwegian forest cat
Photographs of a friend’s cat named Björn. Björn is a fluffy Norwegian forest cat.
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
National Park
Exploring cosmic landscapes in Iceland
My first trip to Iceland, pictures, route and some insights.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Wild road trip through Scotland
A week-long trip to Scotland
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
Wildlife
Exploring cosmic landscapes in Iceland
My first trip to Iceland, pictures, route and some insights.
Wild road trip through Scotland
A week-long trip to Scotland
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
Scientific Graphs
Scatterplot annotation
Annotating scatterplots in R. Drawing polygons around point clusters using base functions and R packages ggplot, ggalt and ggforce.
Scraping Instagram and choosing hashtags
Scraping Instagram for basic public data using R to help us pick “optimal” hastags.
Structure ‘Sort by Q’ explained
STRUCTURE is a popular software used by biologists to infer the population structure of organisms using genetic markers. Barplots in STRUCTURE have an option...
A guide to elegant tiled heatmaps in R
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Elegant scientific graphs: Learning from examples
Scientific graphics are key to understanding complex data. In addition to graphing data, it is important that the graphics are clean, elegant and visually st...
Nature
Wild road trip through Scotland
A week-long trip to Scotland
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
Hamra National Park
A short trip to Hamra national park in central Sweden.
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
NGS
Beautiful circos plots in R
Circos plots are popular for displaying huge amounts of data in a relatively small visual space. This is especially relevant for genomic data. This post expl...
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Read counts of RNA-Seq Spike-ins using STAR and QoRTs
A short tutorial on quantifying spike-ins used in an RNA-Seq experiment.
Which file compression to use on Linux?
This is a quick comparison of some of the data compression and decompression formats on Linux. The idea is to compare compression/decompression time and comp...
ggplot2
A guide to elegant tiled heatmaps in R [2019]
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Calendar plot shiny app and dynamic UI
Create an interactive calendar plot in R using Shiny.
Calendar plot with ggplot2
Creating an availability calendar plot using ggplot2 in R.
Customising ggplot2
Customising a ggplot2 plot using the theme function. In this post, we are going to explore how to adjust various ggplot plot elements. What can be adjusted, ...
Hiking
Exploring cosmic landscapes in Iceland
My first trip to Iceland, pictures, route and some insights.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Hamra National Park
A short trip to Hamra national park in central Sweden.
Heatmap
Scatterplot annotation
Annotating scatterplots in R. Drawing polygons around point clusters using base functions and R packages ggplot, ggalt and ggforce.
A guide to elegant tiled heatmaps in R [2019]
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
A guide to elegant tiled heatmaps in R
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Data Analysis
A guide to elegant tiled heatmaps in R [2019]
A step-by-step guide to data preparation and plotting of simple, neat and elegant heatmaps in R using base graphics and ggplot2.
Scraping Instagram and choosing hashtags
Scraping Instagram for basic public data using R to help us pick “optimal” hastags.
Humanity has never lived in better times
It is easy to be disillusioned and pessimistic about the world we live in. Bad news seems to be followed by worse news. But humanity has come a long way from...
Calendar
Calendar plot shiny app and dynamic UI
Create an interactive calendar plot in R using Shiny.
Calendar plot with ggplot2
Creating an availability calendar plot using ggplot2 in R.
Photo calender using R
Create an elegant photo calendar completely using R.
Web Hosting
The FortaCloud fraud
My horrible experience with cloud computing service fortacloud.co and why you should stay clear of this service too.
Choosing a platform for a personal website
A general introduction and comparison of platforms for hosting a personal website. This is just a primer to the different options available and not a detaile...
Population Genetics
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Structure ‘Sort by Q’ explained
STRUCTURE is a popular software used by biologists to infer the population structure of organisms using genetic markers. Barplots in STRUCTURE have an option...
Image Analysis
Running ImageJ on a Linux cluster
A quick tutorial on running ImageJ on a Linux cluster.
Which file compression to use on Linux?
This is a quick comparison of some of the data compression and decompression formats on Linux. The idea is to compare compression/decompression time and comp...
Autumn
Golden colours of the Autumn
Autumn/Fall pictures from Uppsala.
Autumn in Fulufjället
Autumn pictures from Fulufjällets national park.
Uppsala
Using google maps for aerial photography
Using google maps 3D for drone photography composition. Google maps 3D can be a useful tool to help you find the right composition in advance when planning a...
Golden colours of the Autumn
Autumn/Fall pictures from Uppsala.
Genomics
Beautiful circos plots in R
Circos plots are popular for displaying huge amounts of data in a relatively small visual space. This is especially relevant for genomic data. This post expl...
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Blogging
Choosing a platform for a personal website
A general introduction and comparison of platforms for hosting a personal website. This is just a primer to the different options available and not a detaile...
Personal Website
Choosing a platform for a personal website
A general introduction and comparison of platforms for hosting a personal website. This is just a primer to the different options available and not a detaile...
Camping
Exploring South Sweden
A short road trip from Copenhagen, Denmark to Uppsala, Sweden travelling through several locations in Southern Sweden.
Adobe Illustrator
Low-Polygon Portrait
A short guide to creating a low-polygon portrait using Adobe Illustrator and Adobe Photoshop.
Adobe Photoshop
Low-Polygon Portrait
A short guide to creating a low-polygon portrait using Adobe Illustrator and Adobe Photoshop.
Portrait Design
Low-Polygon Portrait
A short guide to creating a low-polygon portrait using Adobe Illustrator and Adobe Photoshop.
markdown
Markdown basics
Introduction to the basics of markdown markup.
Cat
Björn the Norwegian forest cat
Photographs of a friend’s cat named Björn. Björn is a fluffy Norwegian forest cat.
Lapland
Polar adventures through Swedish Lapland
A week long winter roadtrip from Uppsala, Sweden to Narvik, Norway through the pristine taiga landscapes of Swedish Lapland in search of snow, auroras and wi...
UK
City trip to Leeds, UK
A short trip to Leeds
Cloud Computing
The FortaCloud fraud
My horrible experience with cloud computing service fortacloud.co and why you should stay clear of this service too.
Bee
Curious about a Bee Swarm
A little video about a honey bee swarm in the apple trees.
Bash
Which file compression to use on Linux?
This is a quick comparison of some of the data compression and decompression formats on Linux. The idea is to compare compression/decompression time and comp...
Scotland
Wild road trip through Scotland
A week-long trip to Scotland
RNA-Seq
Read counts of RNA-Seq Spike-ins using STAR and QoRTs
A short tutorial on quantifying spike-ins used in an RNA-Seq experiment.
Statistics
Multiple Statistical Testing
In the advent of big data such as genomics, running numerous statistical tests is unavoidable. But long comes strange statistical problems. This post investi...
ImageJ
Running ImageJ on a Linux cluster
A quick tutorial on running ImageJ on a Linux cluster.
Iceland
Exploring cosmic landscapes in Iceland
My first trip to Iceland, pictures, route and some insights.
Texas
Road trip through Texas, USA
A conference trip to Austin, Texas and my experiences.
USA
Road trip through Texas, USA
A conference trip to Austin, Texas and my experiences.
Scraping Instagram and choosing hashtags
Scraping Instagram for basic public data using R to help us pick “optimal” hastags.
Web Scraping
Scraping Instagram and choosing hashtags
Scraping Instagram for basic public data using R to help us pick “optimal” hastags.
Design
Photo calender using R
Create an elegant photo calendar completely using R.
Norway
Snowy Landscapes
A short winter getaway and snow landscape photography.
Winter
Snowy Landscapes
A short winter getaway and snow landscape photography.
Gardening
Mini terrariums
Mini terrariums in glass bowls.
Plants
Mini terrariums
Mini terrariums in glass bowls.
Shiny App
Calendar plot shiny app and dynamic UI
Create an interactive calendar plot in R using Shiny.
Drone
Using google maps for aerial photography
Using google maps 3D for drone photography composition. Google maps 3D can be a useful tool to help you find the right composition in advance when planning a...
Genetics
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Linkage Disequilibirium
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
SNP
Fast LD computation from VCF files using Tomahawk
Fast LD computation from a VCF file using vcftools, bcftools and tomahawk. This avoids the use of PLINK or conversion to PLINK formats.
Portugal
Road trip through Portugal
A conference and road trip through Portugal.
Greece
Exploring history and culture in Thessaloniki
A short weekend away in Thessaloniki, Greece.